| Pos | Team | PL | GD | PTS |
|---|---|---|---|---|
| 1 |  Nõmme United | 36 | +98 | 92 |
| 2 |  Viimsi | 36 | +56 | 78 |
| 3 |  Tartu Welco | 36 | +20 | 63 |
| 4 |  Elva | 36 | +3 | 58 |
| 5 |  Flora II | 36 | +5 | 48 |
| 6 |  FCI Levadia II | 36 | -5 | 45 |
| 7 |  Nõmme Kalju II | 36 | -23 | 45 |
| 8 |  FC Tallinn | 36 | -14 | 40 |
| 9 |  Tallinna Kalev II | 36 | -43 | 27 |
| 10 |  Luunja | 36 | -97 | 10 |
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